Ressources

Resources

Bibliography


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Barthélémy, D., Edelin, C., Hallé, F. 1991. Canopy architecture, in: Raghavendra A.S. (Ed.), Physiology of trees, John Wiley and Sons, Chichester, 1991, pp. 1-20


Barthélémy, D., Caraglio, Y. 2007. Plant Architecture: A Dynamic, Multilevel and Comprehensive Approach to Plant Form, Structure and Ontogeny. Annals of Botany, 99 (3) : pp. 375-407 19 (access to paper and pdf)


Barthélémy, D., Caraglio, Y., Sabatier, S. 2009. Crown architecture of valuable broadleaved species. In Spiecker H., Hein S., Makkonen-Spiecker K., Thies M. (Eds). Valuable broadleaved forests in Europe. Leiden: Brill (European Forest Institute Research Reports, vol. 22).


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Buis, R., Barthou, H. 1983. Relations Dimensionnelles dans une série organique en croissance chez une plante supérieure. IXème Congrès international de Biologie Mathématique, Paris, 8-10 septembre 1983. Bio-Mathematics revue, Les éditions européennes - France., pp. 1-19 (pdf)


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McCree, Keith J. 1972. The action spectrum, absorptance and quantum yield of photosynthesis in crop plants. Agricultural and Forest Meteorology, 9, pp. 191-216


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Cournède P.-H., Kang, M. Z., Mathieu, A., Barczi, J. F., Yan, H. P., Hu, B. G., and De Reffye, P. 2006. Structural factorization of plants to compute their functional and architectural growth. Simulation, 82(7), pp. 427-438 (access to paper and pdf)


Cournède P.-H., Chen Y., Wu Q., Baey C. and B. Bayol B. 2013. Development and Evaluation of Plant Growth Models: Methodology and Implementation in the PYGMALION platform. Mathematical Modelling of Natural Phenomena, 8 (04) , pp 112-130. doi:10.1051/mmnp/20138407. (access to paper and pdf)


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Oliver Deussen, Bernd Lintermann 2005. Digital Design of Nature: Computer Generated Plants and Organics. Editor: Springer may 2005. 307 p. ISBN:978-3540405917


Diao, J, de Reffye, P, Lei, X.-D, Hong Guo, H, and Letort, V. 2012. Simulation of the topological development of young eucalyptus using a stochastic model and sampling measurement strategy. In: Computers and Electronics in Agriculture, 80, 2012, pp. 105-114 (access to paper and pdf)


Diepen, C. V., Wolf, J., Keulen, H. V., Rappoldt, C. 1989. WOFOST: a simulation model of crop production. Soil use and management, 5(1), pp. 16-24 (access to paper and pdf)


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Edelin C. 1977. Images de l'architecture des conifères. Thèse de Doctorat (Sciences biologiques option Biologie végétale). Université de Montpellier II, 255 p.


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Feller, W. 1968. An introduction to probability theory and its applications, vol. 1, 3rd edn. Wiley, New York


Feng, L. , Mailhol, J. C. , Rey, H., Griffon, S., Auclair, D., de Reffye, P. 2014. Comparing an empirical crop model with a functional structural plant model to account for individual variability. European Journal of Agronomy, 53 (1) : pp. 16-27


Fourcaud T., Zhang X.-P., Stokes A., Lambers H., Korner C. 2008. Plant growth modelling and applications: the increasing importance of plant architecture in growth models. Annals of Botany, 101 (8), pp.1053-1063. (access to paper and pdf)


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Gaines B.R. 1979. General systems research: quo vadis ? In: General Systems: Yearbook of the Society for General Systems Research. Vol.24, 1979, pp.1-9.


Gijzen, H. 1995. CO2 uptake by the crop. Crop growth and development. In: J.C. Bakker, G. P. A. Bot, H. Challa, and Van de Braak, N.J. (eds), Greenhouse climate control-an integrated approach, Wageningen Pers, The Netherlands. pp. 16-35


Godin C., Caraglio Y. 1998. A multiscale model of plant topological structures. Journal of Theoretical Biology, 1998, n. 191, pp.1-46.


Granier, C., Massonnet, C., Turc, O., Muller, B., Chenu, K., and Tardieu, F. 2002. Individual Leaf Development in Arabidopsis thaliana: a Stable Thermal-time-based Programme. Annals of Botany (2002) 89 (5): pp. 595-604 (access to paper and pdf)


Guo, Y, Ma, YT, Zhan, ZG, Dingkuhn, M, Luquet, D, and de Reffye, P. 2006. Parameter optimisation and field validation of the functional-structural model GREENLAB for maize. Annals of Botany 97: 217-230. (access to paper and pdf)


Guo Y., Fourcaud T., Jaeger M., Zhang X.-P. and Li B.-G. 2011. Plant growth and architectural modelling and its applications, 2011. April 1st, 2011 Annals of Botany. Vol 107, No 5, pp. 723-727 (access to paper and pdf)


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Hallé, F., Martin, R. 1968. Etude de la croissance rythmique chez Hevea brasiliensis Müll. Arg (Euphorbiaceae - Crotonoïdées). Adansonia, Série 2 8: 475-503.


Hallé, F., Oldemann, R.A.A. 1970. Essai sur l'architecture et la dynamique de croissance des arbres tropicaux. Paris: Masson.


Heuvelink E. 1996. Dry matter partitioning in tomato: validation of a dynamic simulation model. Annals of Botany - London 77, pp. 71-80 (access to pdf)


Heuvelink E. 1999. Evaluation of a dynamic simulation model for tomato crop growth and development. Annals of Botany, 83 (4), pp. 413-422


Heuvelink E., Marcelis L., Bakker M., Van der Ploeg A. 2007. Use of crop growth models to evaluate physiological traits in genotypes of horticultural crops. In Scale and Complexity in Plant Systems Research: Gene-Plant-Crop Relations, eds Spiertz JHJ, Struik PC, van Laar HH (Springer, Heidelberg), pp 223-233 (access to pdf)


Hallé, F., Oldemann, R.A.A., Tomlinson, P.B. 1978. Tropical trees and forests. Berlin: Springer-Verlag.


Hu B.-G, de Reffye P., Zhao X., Yan H.-P. and Kang M.-G 2003. GreenLab: A new methodology towards plant functional-structual model-Structual aspect. In: Hu, B.G., Jaeger, M. (Eds.), Plant Growth Modeling and Applications: Proceedings - PMA03, Tsinghua University Press and Springer, Beijing. pp. 21-35. (pdf)

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Jaeger M., de Reffye P. 1992. Basic concepts of computer simulation of plant growth. Journal of Biosciences, 17, 3, pp. 275-291. (access to paper and pdf)


Jaeger M., Sun R., Jia J.-Y, le Chevalier V. 2010. Efficient virtual plant data structure for visualization and animation. In: Proceedings of IADIS International Conferences Computer Graphics, Visualization, Computer Vision and Image Processing 2010, MCCSIS 2010 Freiburg, Germany, July 27-29, ISBN 978-972-8939-22-9, 2010 IADIS, pp. 65-75 (pdf)


Jeuffroy M.-H., Ney B. 1997. Crop physiology and productivity, Field Crops Research, Volume 53, Issues 1-3, July 1997, pp. 3-16, ISSN 0378-4290. (access to paper and pdf)


Johnson I. 2010. PlantMod: exploring the physiology of plant canopies. (pdf) (access to document and pdf)


Jones, C. A., Ritchie, J. T., Kiniry, J. R., Godwin, D. C., Otter, S. I. 1983. The CERES wheat and maize models. Minimum Data Sets for Agrotechnology Transfer, 95 p.


Jones, C.A., and J.R. Kiniry. 1986. CERES-Maize : a simulation model of maize growth and development. Edited by C.A. Jones and J.R. Kiniry. College Station : Texas A&M University Press, 1986. 194 p.


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Kang, M.G., Cournède, P.H., de Reffye, P., Auclair, D and Hu, B.-G. 2008. Analytical study of a stochastic plant growth model: Application to the GreenLab model. Math. Comput. Simul. 78, 1 (June 2008), pp. 57-75


Kang, M.G., Cournède, P.H., Mathieu, A., Letort, V., & Qi, R. 2009. A Functional-Structural Plant Model: Theories and its Applications in Agronomy. Cao, W. and White, J. and Wang, E. Crop Modeling and Decision Support, Springer, pp. 148-160, 2009, 978-3-642-01131-3


Keating, B. A., Carberry, P. S., Hammer, G. L., Probert, M. E., Robertson, M. J., Holzworth, D., ... , Smith, C. J. 2003. An overview of APSIM, a model designed for farming systems simulation. European Journal of Agronomy, 18(3), pp. 267-288 (access to paper and pdf)


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Lanner R. M. 1976. Patterns of shoot development in Pinus and their relationship to growth potential. In Cannell, M. G. R., Last, F. T. (Eds). Tree physiology and yield improvement. London : Academic Press, p. 223-243 .


Lecoeur J., Ney B. 2003. Change with time in potential radiation use efficiency in field pea, European Journal of Agronomy. vol. 19, pp. 91-105


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Ma Y, Wen M, Guo Y, Li B, Cournède PH, de Reffye P. 2008. Parameter optimization and field validation of the functional-structural model GreenLab for maize at different population densities. Annals of Botany 101: 1185-1194 (access to paper and pdf)


Mailhol, J. and Gonzalez, J. 1993. Furrow Irrigation Model for Real-Time Applications on Cracking Soils. Journal of Irrigation and Drainage Engineering, 1993, 119:5, pp. 768-783


Monteith, J. L., Moss, C. J. 1977. Climate and the efficiency of crop production in Britain [and discussion]. Philosophical Transactions of the Royal Society B: Biological Sciences, 281(980), pp. 277-294 (access to paper and pdf)

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Nicolini, E., Chanson, B., Bonne, F. 2001. Stem growth and epicormic branch formation in understorey beech trees (Fagus sylvatica L.). Annals of Botany, 87 (6) : pp. 737-750 (access to paper and pdf)


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Oldeman R.A.A. 1974. L'architecture de la forêt guyanaise. Mémoire no.73. Paris: O.R.S.T.O.M.


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Prusinkiewicz, P., Lindenmayer, A., Hanan, J. 1988. Development models of herbaceous plants for computer imagery purposes. In ACM SIGGRAPH Computer Graphics, Vol. 22, No. 4, pp. 141-150


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De Reffye P., P., Edelin, C., Françon, J., Jaeger, M., and Puech, C. 1988. Plant models faithful to botanical structure and development. In ACM SIGGRAPH Computer Graphics, Vol. 22, No. 4, pp. 151-158


De Reffye P., Hu BG, 2003. Relevant qualitative and quantitative choices for building an efficient dynamic plant growth model: GreenLab case. In Hu BG, Jaeger M (Eds), Plant growth modelling and applications (PMA03), Proceedings of the 2003' International Symposium on Plant Growth Modeling, Simulation, Visualization and Their ApplicationsTsinghua University Press, Springer; pp. 87-107. (pdf)


De Reffye P., Heuvelink E, Barthélémy D, Cournède PH. 2008. Plant growth models. In: Jorgensen S, Fath B (Eds.), Ecological Models, Vol. 4 of Encyclopedia of Ecology (5 volumes), Elsevier (Oxford), pp. 2824-2837. (pdf)


De Reffye P., Kang M.-Z., Hua J., and Auclair D. 2012. Stochastic modelling of tree annual shoot dynamics. Annals of Forest Science, 69(2) (access to paper and pdf)


De Reffye, P., Jaeger, M. 2013. Modèles mathématiques du développement et de la croissance de l'architecture des plantes. Le cas du modèle GreenLab. In Varenne, F., Silberstein, M. (Eds) Modéliser et simuler. Epistémologies et pratiques de la modélisation et de la simulation. Tome 1. Paris : Editions Matériologiques (Sciences et Philosophie, vol. Sciences et Philosophie). pp. 625-658


Ross, J. 1981. The radiation regime and architecture of plant Stands. Tasks for Vegetation sciences. 3, Dr. W Junk Publ., The Hague.


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Sievänen, R., Perttunen, J., Nikinmaa, E., and Posada, J.M. 2009. Functional Structural Plant Models - Case LIGNUM. (Invited Talk). In: Proceedings of Plant Growth Modeling, Simulation, Visualization and Applications (PMA), 2009 Third International Symposium on , 9-13 Nov. 2009, IEEE Compute Society, pp.3-9, doi: 10.1109/PMA.2009.64


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Troll W. 1937. Vergleichende Morphologie der höheren Pflanzen. Berlin: Borntraeger.


Thornley J. and Johnson I. 1990. Plant and crop modelling. A mathematical approach to plant and crop physiology. Clarendon Press, Oxford, 1990, 660 pp. (pdf, partial)


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Wery J. and Lecoeur J. 2000. Learning crop physiology from the development of a crop simulation model. Journal of Natural Resources and Life Sciences Education, 29, pp. 1-7.


de Wit C.T. 1965. Photosynthesis of leaf canopies. Centre for Agricultural Publications and Documentation, Wageningen, 1965, 63 p. (pdf)


De Wit, C. D., Brouwer, R., Vries, F. D., Setlik, I. 1970. The simulation of photosynthetic systems. In Prediction and measurement of photosynthetic productivity. Proceedings of the IBP/PP Technical Meeting, Tfebon,[Czechoslovakia], 14-21 September, 1969. Wageningen, Netherlands, PUDO, pp. 47-70.


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Yan H.-P., Barczi J.-F. , de Reffye P., and Hu B.-G. 2002. Fast Algorithms of Plant Computation Based on Substructure Instances. International Conferences in Central Europe on Computer Graphics, Visualization and Computer Vision 3/10 (2002) pp. 145-153 (access to paper and pdf)


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Zhan, Z.-G. , de Reffye, P, Houllier, F, Hu B.-G. 2003. Fitting a functional-structural growth model with plant architectural data. Hu, B.-G. Hu, Jaeger, M. (Eds.), Proceedings of PMA03. Plant Growth Modeling and Applications, Springer/Tsinghua University Press, Beijing, China (2003), pp. 236-249. (pdf)


Zhao, X., De Reffye, P., Xiong, F. L., Hu, B. G., & Zhan, Z. G. 2001. Dual-scale automaton model for virtual plant development. The Chinese Journal of Computers, 24(60), pp. 608-617

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