COURSES

-> About this Resource
Scope *______
Map *____

-> Preliminary Courses
Contents & Objectives *__________________
Map *____
-> Botany
Contents & Objectives *__________________
Map *____
-> Axis Typology Patterns
Typology basis *___________
Pictograms *_________
Sexuality & development *___________________
Growth *______
Branching rhythms *______________
Branching delays *_____________
Branching positional *________________
Branching arrangement *__________________
Axis orientation *_____________
Architectural models *________________
-> Architectural Unit
About Arc. Models *______________
Models limitations *______________
Architectural Units *______________
Reiteration *_________
Sequence of development *___________________
Morphogenetic gradients *___________________
Physiological age *_____________
-> An Example
Wild Cherry (young) *_______________
Wild Cherry (adult) *______________
Wild Cherry (mature) *________________
Quiz *____
Case study Quiz *_____________
Supplementary resources *____________________

-> Eco-Physiology
Contents & Objectives *__________________
Map *____
-> Growth Factors
Factors affecting Growth *___________________
Endogenous Processes *_________________
Environmental Factors *_________________
Thermal Time *___________
-> Light interaction
P.A.R. *_____
Light absorption *_____________
Photosynthesis *___________
Respiration *_________
Maintenance respiration *__________________
L.U.E. Model *__________
Density effect *___________
Density effect on crop *__________________
-> Biomass
Biomass Pool *__________
Biomass Partitioning *_______________
Crop models *__________
A Crop model example *__________________
Quiz *____
Supplementary resources *___________________

-> Applied Mathematics
Contents & Objectives *__________________
Map *____
-> Probabilities
Section contents *____________
Discrete Random Variable *___________________
Expected value, Variance *___________________
Properties *________
-> Useful Laws
Bernoulli Trials *___________
Binomial Law *__________
Geometric Law *____________
Negative Binomial Law *_________________
-> Dynamic systems
Section contents *_____________
Useful functions *____________
Beta density *__________
Exercises *________
Negative Exponential *________________
Systems functions *______________
Discrete dynamic systems *___________________
Parameter Identification *__________________
Parameter estimation *________________
Supplementary Resources *____________________


-> GreenLab courses
GreenLab presentation *__________________
-> Overview
Presentation & Objectives *____________________
Map *____
Growth and components *___________________
Plant architecture *_______________
Biomass production *________________
Modelling - FSPM *______________
GreenLab principles *________________
Applications *__________
Supplementary resources *_____________________
-> Principles
Presentation & Objectives *____________________
Map *____
-> About modelling
Scientific disciplines *________________
Organs: tree components *___________________
Factors affecting growth *___________________
Model-simulation workflow *____________________
GreenLab inherits from *__________________
GreenLab positioning *_________________
The growth cycle *______________
Inside the growth cycle *___________________
Implementations *______________
Supplementary resources *____________________
-> Development
Presentation & Objectives *____________________
Map *____
Modelling Scheme *______________
Tree traversal modes *________________
-> Stochastic modelling
Principles *_______
-> Development
Growth Rhythm *____________
Damped growth *____________
Viability *______
Rhythmic axis *___________
Branching *________
Stochastic automaton *_________________
-> Organogenesis equations
Principles *_______
Organ cohorts *___________
Organ numbering *_____________
Substructure factorization *____________________
Stochastic case *____________
-> Structure construction
Construction modes *_______________
Construction basis *______________
Axis of development *________________
Stochastic reconstruction *___________________
Implicit construction *________________
Explicit construction *________________
3D construction *____________
Supplementary resources *____________________
-> Production-Expansion
Presentation & Objectives *____________________
Map *____
-> EcoPhysiology reminders
Relevant concepts *______________
Temperature *__________
Light interception *______________
Photosynthesis *___________
Biomass common pool *_________________
Density *______
-> Principals
Growth cycle *__________
Refining PbMs *___________
Organ cohorts *___________
GreenLab vs PbM & FSPM *___________________
-> GreenLab's equations
Summary *_______
Production equation *_______________
Plant demand *__________
Organ dimensions *______________
A dynamic system view *__________________
Equation terms *____________
Full Model *________
Model behaviour *______________
Supplementary resources *____________________
-> Applications
Presentation & Objectives *____________________
Map *____
-> Measurements
Agronomic traits *_____________
Mesurable/hidden param. *___________________
Fitting procedure *______________
-> Fitting structure
Principles *_______
-> Development
Simple development *_______________
Damped growth *____________
Rhythmic growth *_____________
Rhythmic growth samples *___________________
Mortality *_______
Branching *________
-> Crown analysis
Analysis principles *______________
Equations *________
Example / Exercise *_______________
-> Case study
Plant Architecture *______________
Development simulation *__________________
Introducing Biomass *_______________
Biomass partitioning *_______________
Equilibrium state *_____________
Supplementary resources *____________________

-> Tools (software)
Presentation & Objectives *_____________________
Map *____
Fitting, Stats *___________
Simulation *_________
Online tools *__________

Preliminary Course

Botany. Architectural Analysis

Plant organization


In many species the edification of an axis is due to a rhythmic process of growth.
The terminal or apical bud periodically breaks (in northern temperate countries in springtime) and new organs of the leafy stem are expanded.
This new stem portion thus elaborated during a continuous expansion phase is called a growth unit.


Growth units and annual shoot levels
    As defined by Hallé and Martin (1968), a growth unit is the portion of stem expanded during an uninterrupted phase of expansion.
    The growth unit, in a plant structure, is a key notion for plant structure modelling and simulation.

      Succesive Growth Units
      Branch of Cassava.
         Two successive growth units on a cassava branch. (Manihot esculenta, photo M. Jaeger, CIRAD)



    In some temperate species, shoot expansion may occur in one, two or more successive events giving rise to an annual shoot made up of one or a succession of several growth units or growth cycles occurring in a growing season.

    More generally, rhythmic growth can be expressed several times during a growing season: this is called polycyclism, while the appearance of a single growth unit is called monocyclism (Bugnon and Bugnon, 1951 or Lanner 1976)

      Annual Shoot with two Growth Units
      An annual shoot on a young pine (Pinus halepensis).
         This annual shoot (delimited in yellow) is a case of polycyclism, built from two growth units (delimited in red).
         (Photo Y. Caraglio, CIRAD)


Bibliography

Hallé, F., Martin, R. 1968. Etude de la croissance rythmique chez Hevea brasiliensis Müll. Arg (Euphorbiaceae - Crotonoïdées). Adansonia, Série 2 8: 475-503.

Bugnon P., Bugnon F. 1951. Feuilles juvéniles et pousses multinodales chez le Pin maritime. Bulletin de la Société d'Histoire Naturelle de Toulouse, n. 86, p. 18-23.

Lanner R. M. 1976. Patterns of shoot development in Pinus and their relationship to growth potential. In Cannell, M. G. R., Last, F. T. (Eds). Tree physiology and yield improvement. London : Academic Press, p. 223-243 .

Definition

Growth Unit
Botany. Botanical concept qualifying a successive list of phytomers building a stem portion elaborated during a continuous extension phase.