COURSES

-> About this Resource
Scope *______
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-> Preliminary Courses
Contents & Objectives *__________________
Map *____
-> Botany
Contents & Objectives *__________________
Map *____
-> Axis Typology Patterns
Typology basis *___________
Pictograms *_________
Sexuality & development *___________________
Growth *______
Branching rhythms *______________
Branching delays *_____________
Branching positional *________________
Branching arrangement *__________________
Axis orientation *_____________
Architectural models *________________
-> Architectural Unit
About Arc. Models *______________
Models limitations *______________
Architectural Units *______________
Reiteration *_________
Sequence of development *___________________
Morphogenetic gradients *___________________
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-> An Example
Wild Cherry (young) *_______________
Wild Cherry (adult) *______________
Wild Cherry (mature) *________________
Quiz *____
Case study Quiz *_____________
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-> Eco-Physiology
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-> Growth Factors
Factors affecting Growth *___________________
Endogenous Processes *_________________
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Thermal Time *___________
-> Light interaction
P.A.R. *_____
Light absorption *_____________
Photosynthesis *___________
Respiration *_________
Maintenance respiration *__________________
L.U.E. Model *__________
Density effect *___________
Density effect on crop *__________________
-> Biomass
Biomass Pool *__________
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A Crop model example *__________________
Quiz *____
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-> Applied Mathematics
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-> Probabilities
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Discrete Random Variable *___________________
Expected value, Variance *___________________
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Binomial Law *__________
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Negative Binomial Law *_________________
-> Dynamic systems
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Negative Exponential *________________
Systems functions *______________
Discrete dynamic systems *___________________
Parameter Identification *__________________
Parameter estimation *________________
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-> GreenLab courses
GreenLab presentation *__________________
-> Overview
Presentation & Objectives *____________________
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Growth and components *___________________
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Biomass production *________________
Modelling - FSPM *______________
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-> Principles
Presentation & Objectives *____________________
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-> About modelling
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Organs: tree components *___________________
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GreenLab inherits from *__________________
GreenLab positioning *_________________
The growth cycle *______________
Inside the growth cycle *___________________
Implementations *______________
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-> Development
Presentation & Objectives *____________________
Map *____
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-> Stochastic modelling
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-> Development
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Damped growth *____________
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Rhythmic axis *___________
Branching *________
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-> Organogenesis equations
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Organ cohorts *___________
Organ numbering *_____________
Substructure factorization *____________________
Stochastic case *____________
-> Structure construction
Construction modes *_______________
Construction basis *______________
Axis of development *________________
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Implicit construction *________________
Explicit construction *________________
3D construction *____________
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-> Production-Expansion
Presentation & Objectives *____________________
Map *____
-> EcoPhysiology reminders
Relevant concepts *______________
Temperature *__________
Light interception *______________
Photosynthesis *___________
Biomass common pool *_________________
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-> Principals
Growth cycle *__________
Refining PbMs *___________
Organ cohorts *___________
GreenLab vs PbM & FSPM *___________________
-> GreenLab's equations
Summary *_______
Production equation *_______________
Plant demand *__________
Organ dimensions *______________
A dynamic system view *__________________
Equation terms *____________
Full Model *________
Model behaviour *______________
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-> Applications
Presentation & Objectives *____________________
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-> Measurements
Agronomic traits *_____________
Mesurable/hidden param. *___________________
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-> Fitting structure
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-> Development
Simple development *_______________
Damped growth *____________
Rhythmic growth *_____________
Rhythmic growth samples *___________________
Mortality *_______
Branching *________
-> Crown analysis
Analysis principles *______________
Equations *________
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-> Case study
Plant Architecture *______________
Development simulation *__________________
Introducing Biomass *_______________
Biomass partitioning *_______________
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-> Tools (software)
Presentation & Objectives *_____________________
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Preliminary Course

Applied Mathematics

Formalism of dynamic systems


Dynamic systems
    A definition of dynamic systems: a little bit of systems theory

      In 'General systems research: quo vadis? ' (General Systems: Yearbook of the Society for General Systems Research, Vol.24, 1979, pp.1-9), the famous British scientist in systems theory, Brian R. Gaines, writes the following definition of a system:
      "A system is what is distinguished as a system. (...) Systems are whatever we like to distinguish as systems (...).
      What then of some of the characteristics that we do associate with the notion of a system, some form of coherence and some degree of complexity?
      The Oxford English Dictionary states that a system is a group, set or aggregate of things, natural or artificial, forming a connected or complex whole.
      [Once] you have a system, you can study it and rationalize why you made that distinction, how you can explain it, why it is a useful one.
      However, none of your post-distinction rationalization is intrinsically necessary to it being a system.
      They are just activities that naturally follow on from making a distinction when we take note that we have done it and want to explain to ourselves, or others, why".

      According to that definition, a system is characterized by our ability to discriminate between what is part of the system from what is not.

      System System characterization (Drawing V. Letort-Le Chevalier, ECOLE CENTRALE PARIS)

      Dynamical systems are mathematical objects used to model systems whose state (or instantaneous description) changes over time.

      They can be continuous or discrete, depending on whether time is considered as a continuous (t ∈ ℜ) or a discrete variable (tn ∈ N ); stochastic or deterministic, depending on whether random effects are considered or not.

Discrete dynamic systems
    Mathematical definition of discrete dynamic systems

      A discrete dynamic model M(p) consists of two elements that can be written under the following generic form:
      - A set of equations, denoted by f, describing the system behaviour, i.e. the transition from its current state at time n to the following one:
        Xn+1 = f(n, Xn, Un, P)
        where Xn ∈ ℜ nx represents the vector of state variables of size nx that characterizes the system at time n, X0 being the initial conditions;
        Un ∈ ℜnu is the vector of control variables, of size nu, that characterizes the external factors or stimuli that are applied to the system at time n,
        P ∈ ℜnp is the vector of the model parameters, of size np, i.e. a set of constants that characterizes the model behaviour.

      - A set of observation functions describing the relationships between the state variables and the model output Y ∈ ℜno that correspond to the vector of available discrete time measured quantities:
        Y(ns, Uns, P) = g (ns, Xns(Uns, ns, P) for each sampling time ns with s = 1, ..., Ns
        where Xns and Uns are respectively standing for the state variable and control variable at sampling time ns.

      DiscreteDynamic System Components of a discrete dynamic system (Drawing V. Letort-Le Chevalier, ECOLE CENTRALE PARIS)

Bibliography

Gaines B.R. 1979. General systems research: quo vadis ? In: General Systems: Yearbook of the Society for General Systems Research. Vol.24, 1979, pp.1-9.