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-> About this Resource
Scope *______
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-> Preliminary Courses
Contents & Objectives *__________________
Map *____
-> Botany
Contents & Objectives *__________________
Map *____
-> Axis Typology Patterns
Typology basis *___________
Pictograms *_________
Sexuality & development *___________________
Growth *______
Branching rhythms *______________
Branching delays *_____________
Branching positional *________________
Branching arrangement *__________________
Axis orientation *_____________
Architectural models *________________
-> Architectural Unit
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Architectural Units *______________
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Morphogenetic gradients *___________________
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-> An Example
Wild Cherry (young) *_______________
Wild Cherry (adult) *______________
Wild Cherry (mature) *________________
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-> Eco-Physiology
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-> Light interaction
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Photosynthesis *___________
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Maintenance respiration *__________________
L.U.E. Model *__________
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Density effect on crop *__________________
-> Biomass
Biomass Pool *__________
Biomass Partitioning *_______________
Crop models *__________
A Crop model example *__________________
Quiz *____
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-> Applied Mathematics
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Negative Binomial Law *_________________
-> Dynamic systems
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Negative Exponential *________________
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-> GreenLab courses
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-> Overview
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Biomass production *________________
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-> Principles
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Inside the growth cycle *___________________
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Branching *________
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-> Organogenesis equations
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Organ cohorts *___________
Organ numbering *_____________
Substructure factorization *____________________
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-> Structure construction
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Implicit construction *________________
Explicit construction *________________
3D construction *____________
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-> Production-Expansion
Presentation & Objectives *____________________
Map *____
-> EcoPhysiology reminders
Relevant concepts *______________
Temperature *__________
Light interception *______________
Photosynthesis *___________
Biomass common pool *_________________
Density *______
-> Principals
Growth cycle *__________
Refining PbMs *___________
Organ cohorts *___________
GreenLab vs PbM & FSPM *___________________
-> GreenLab's equations
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Production equation *_______________
Plant demand *__________
Organ dimensions *______________
A dynamic system view *__________________
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Full Model *________
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-> Applications
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Damped growth *____________
Rhythmic growth *_____________
Rhythmic growth samples *___________________
Mortality *_______
Branching *________
-> Crown analysis
Analysis principles *______________
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-> Case study
Plant Architecture *______________
Development simulation *__________________
Introducing Biomass *_______________
Biomass partitioning *_______________
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-> Tools (software)
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Map *____
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Online tools *__________

GreenLab Course

Production-Expansion

Biomass partitioning


Organs
    Sinks and Sources

      Organs, considered within their specific cohorts, are in competition during their growth.

      For a given organ, the ability to accumulate biomass is characterized by its sink strength.
      We can consider that all organs show this capability. They are sinks.

      Assumption.
        Organs are sinks during their expansion. The sink strength function, characterizing organ biomass demand during organ development (a given number of growth cycles) is usually not constant, but becomes null when expansion is finished.
        It means that there is no organ maintenance "cost" in this model.

      Conversely, some organs are considered as having the ability to produce biomass
      They are sources. They show this capability as soon they appear, and until they reach their functionning time. The capability of the source is characterized by its source strength.

      Assumption.
        In our model presentation (and implementation), we consider that only leaves show the ability to be sources.
        The fonctioning time is assumed to be greater than the expansion time.

      In theory, each sink organ could also be a source and the model formalism could easily be extended to allow it.
      Beta laws are often used to express sink and source strength functions, giving a wide range of shapes from two single parameters (see further in equation sub-section)



    Typical organs in the GreenLab model

      The list of organs is not exhaustive.
      While leaves are the only source organ, usual sink organs are internodes, leaves, female and male fruits, rings, roots.

      However, their respective number of cohorts, numbers within cohort and sink strength may be significantly different from each other.

      Roots.
        In this model, the root system defines a single unique organ.
        Its sink strength is defined by a single constant ratio (typically 15 to 20%) of plant demand.
        Despite this crude approach, the model show satisfactory results on agricultural plants such as beetroot.

      Female and male fruits.
        On some crop plants, it may be convenient to distinguish between male and female sexual organs. Their phenology can be quite different as well as their relative ability accumulate biomass. Thus, their relative sink strength may be significantly different, in terms of both strength and dynamics. For instance on maize, tassels and cobs should be considered as different organs.

      Internodes
        Internodes are sink organs and not considered as being potential sources.
        The biomass allocated to internodes defines in fact the pith volume (and its dimensions).
        Internode organs do not include wood rings, resulting from another process.
      (Wood) Rings
        Secondary growth, and especially ring width establishment, may be a critical biomass consumer, and must thus be considered as a sink organ.
        Computation of the biomass allocated to wood rings is rather complex (see elements below)

      Other specific organs.
        As an example, on cotton, the leaf organ must be split into two organs, the blade (sink and source) and the petiole (sink only). Such should be the case for all plants whose petioles are significant biomass consumers and show a different sink strength function compared to the blade.